PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02839.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 307aa    MW: 34128.1 Da    PI: 4.7792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02839.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.4e-15111158253
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                              +  GVr++k +g+W+AeIr+p     +  r +lg+f+t+e A++a+   rk++
  Rsa1.0_02839.1_g00001.1 111 KPVGVRQRK-WGKWAAEIRHPI----TkIRTWLGTFDTEEAAHQAYKVKRKEY 158
                              789*****9.**********72....36**********999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-18110151No hitNo description
PfamPF008475.3E-9111159IPR001471AP2/ERF domain
PROSITE profilePS5103217.187111169IPR001471AP2/ERF domain
SMARTSM003803.7E-13111171IPR001471AP2/ERF domain
PRINTSPR003671.2E-5112123IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-14113158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-17114153IPR001471AP2/ERF domain
PRINTSPR003671.2E-5134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVGLITKQLS LSDMKKPKRC NPQETQQPLR KVRILVNDPY ATDDDSSSEE GDETKMRRIV  60
RVVNFPPLES VAPPPPPRVA ESASVSSSQD STKTISKKAA AASRPRCSKK KPVGVRQRKW  120
GKWAAEIRHP ITKIRTWLGT FDTEEAAHQA YKVKRKEYDA LLSTTTNDSV SETSQCSRSS  180
PPEQDTSAST PTTNKLKEEI KIAPATGVDS SKEVLFGFNF AELPIPDLGF FAEDEGQMAA  240
DLGFFAEENL DCLFTDDQFD DFTMLGFEDS GGGPSELPDW DFPDVEFDSS FFFADYHQHI  300
PLKSFAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592018.11e-155PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_013592019.11e-155PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_013592020.11e-155PREDICTED: ethylene-responsive transcription factor ERF118
SwissprotQ9CA279e-80EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A0D3CYZ81e-155A0A0D3CYZ8_BRAOL; Uncharacterized protein
STRINGBra004318.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-67ERF family protein